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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
72
ChIP-seq
8
DNase-seq
5
Hi-C
4
total RNA-seq
2
ATAC-seq
1
FAIRE-seq
1
RRBS
Assay category
72
DNA binding
11
DNA accessibility
5
3D chromatin structure
4
Transcription
1
DNA methylation
Target of assay
66
histone
66
histone modification
43
broad histone mark
23
narrow histone mark
4
RNA binding protein
4
transcription factor
2
control
Date released
37
October, 2019
36
May, 2019
7
July, 2019
6
November, 2017
4
June, 2019
3
March, 2020
Available data
89
bigWig
87
bam
79
bed narrowPeak
77
bigBed narrowPeak
14
bed broadPeak
14
bigBed broadPeak
10
bed bed3+
6
fastq
4
tsv
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
93
Homo sapiens
Biosample type
64
tissue
29
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
93
AMP
Genome assembly (visualization)
93
hg19
84
GRCh38
Lab
93
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
organ_slims!
heart
BIOSAMPLE
ASSAY
93 results
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ChIP-seq
DNase-seq
Hi-C
total RNA-seq
ATAC-seq
FAIRE-seq
RRBS
tissue
tibial artery
18
2
1
ascending aorta
13
1
1
thoracic aorta
12
2
1
aorta
11
1
1
primary cell
endothelial cell of umbilical vein
12
2
2
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
endothelial cell of hepatic sinusoid
1
smooth muscle cell of the brain vasculature
1
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