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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
67
ChIP-seq
25
DNase-seq
15
total RNA-seq
3
ATAC-seq
3
Hi-C
2
RRBS
1
small RNA-seq
Assay category
67
DNA binding
28
DNA accessibility
16
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
7
transcription factor
5
RNA binding protein
Date released
47
April, 2019
28
June, 2019
14
July, 2019
12
May, 2019
8
October, 2019
4
March, 2020
3
May, 2021
Available data
111
bigWig
110
bam
95
bed narrowPeak
86
bigBed narrowPeak
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
16
tsv
3
bedpe bed3+
3
hic
2
bed bedMethyl
2
bigBed bedMethyl
Organism
116
Homo sapiens
Biosample type
107
tissue
8
primary cell
1
in vitro differentiated cells
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
116
AMP
Genome assembly (visualization)
119
GRCh38
116
hg19
Lab
116
AMP-T2D consortium
Audit category:
5
inconsistent ontology term
organ_slims!
vasculature
BIOSAMPLE
ASSAY
116 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
RRBS
small RNA-seq
tissue
heart left ventricle
29
3
3
2
1
1
heart
12
16
4
1
1
heart right ventricle
11
1
1
1
right atrium auricular region
7
2
2
1
right cardiac atrium
5
+ See 3 more…
primary cell
cardiac fibroblast
3
2
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
in vitro differentiated cells
cardiac fibroblast
1
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