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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
19
ChIP-seq
ATAC-seq
2
DNase-seq
2
small RNA-seq
Assay category
397
Transcription
19
DNA binding
2
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
14
August, 2017
10
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
1
November, 2018
Available data
417
bigWig
416
bam
396
tsv
19
fastq
9
bed narrowPeak
8
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
418
Homo sapiens
Biosample type
418
tissue
2
primary cell
Organ
476
connective tissue
418
adipose tissue
367
pancreas
247
liver
142
brain
109
heart
92
kidney
88
limb
67
blood vessel
67
vasculature
60
musculature of body
58
bone element
30
nerve
25
artery
18
ureter
13
spleen
3
eye
1
pericardium
1
pituitary gland
Project
418
AMP
Genome assembly (visualization)
419
GRCh38
418
hg19
Lab
418
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
418 results
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total RNA-seq
ChIP-seq
DNase-seq
small RNA-seq
tissue
adipose tissue
382
1
white adipose tissue
12
omental fat pad
4
3
2
1
subcutaneous adipose tissue
6
2
1
visceral abdominal adipose tissue
3
subcutaneous abdominal adipose tissue
1
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