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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
19
ChIP-seq
ATAC-seq
3
small RNA-seq
2
DNase-seq
Assay category
399
Transcription
19
DNA binding
2
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
14
August, 2017
12
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
1
November, 2018
Available data
419
bigWig
418
bam
398
tsv
19
fastq
9
bed narrowPeak
8
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
420
Homo sapiens
Biosample type
418
tissue
2
primary cell
Organ
602
liver
587
pancreas
564
connective tissue
420
adipose tissue
273
epithelium
176
heart
163
brain
154
vasculature
148
blood vessel
129
kidney
88
limb
83
artery
72
musculature of body
58
bone element
54
blood
54
bodily fluid
30
nerve
29
embryo
18
ureter
17
vein
13
spleen
7
eye
2
pericardium
1
pituitary gland
Project
420
AMP
Genome assembly (visualization)
421
GRCh38
420
hg19
Lab
420
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
420 results
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total RNA-seq
ChIP-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
white adipose tissue
12
omental fat pad
4
3
1
2
subcutaneous adipose tissue
6
2
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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