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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
19
ChIP-seq
ATAC-seq
3
small RNA-seq
1
DNase-seq
Assay category
399
Transcription
19
DNA binding
1
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
14
August, 2017
12
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
November, 2018
Available data
418
bigWig
417
bam
398
tsv
18
fastq
8
bed narrowPeak
7
bigBed narrowPeak
5
bed bed3+
2
bed broadPeak
1
bigBed broadPeak
1
tagAlign
Organism
419
Homo sapiens
Biosample type
417
tissue
2
primary cell
Organ
584
pancreas
563
connective tissue
553
liver
419
adipose tissue
273
epithelium
176
heart
161
brain
154
vasculature
148
blood vessel
129
kidney
88
limb
83
artery
72
musculature of body
58
bone element
42
blood
42
bodily fluid
30
nerve
29
embryo
18
ureter
17
vein
9
spleen
7
eye
2
pericardium
1
pituitary gland
Project
419
AMP
Genome assembly (visualization)
420
GRCh38
419
hg19
Lab
419
AMP-T2D consortium
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
month_released!
November, 2018
BIOSAMPLE
ASSAY
419 results
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total RNA-seq
ChIP-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
white adipose tissue
12
omental fat pad
4
3
1
1
subcutaneous adipose tissue
6
2
1
visceral abdominal adipose tissue
3
+ See 1 more…
primary cell
mesenchymal stem cell of adipose
1
1
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