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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
73
ChIP-seq
ATAC-seq
3
small RNA-seq
2
DNase-seq
Assay category
399
Transcription
73
DNA binding
2
DNA accessibility
Target of assay
68
transcription factor
15
RNA binding protein
10
chromatin remodeller
3
histone
3
histone modification
3
narrow histone mark
Date released
386
February, 2021
27
December, 2018
15
January, 2019
14
August, 2017
13
November, 2018
12
July, 2019
5
October, 2018
1
June, 2019
1
May, 2023
Available data
473
bigWig
472
bam
398
tsv
73
fastq
63
bed narrowPeak
62
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
474
Homo sapiens
Biosample type
418
tissue
54
cell line
2
primary cell
Organ
602
liver
587
pancreas
564
connective tissue
420
adipose tissue
273
epithelium
176
heart
163
brain
154
vasculature
148
blood vessel
129
kidney
88
limb
83
artery
72
musculature of body
58
bone element
54
blood
54
bodily fluid
30
nerve
29
embryo
18
ureter
17
vein
13
spleen
7
eye
2
pericardium
1
pituitary gland
Project
474
AMP
Genome assembly (visualization)
475
GRCh38
474
hg19
Lab
474
AMP-T2D consortium
Audit category:
1
inconsistent control
Audit category:
12
missing controlled_by
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
474 results
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total RNA-seq
ChIP-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
white adipose tissue
12
omental fat pad
4
3
1
2
subcutaneous adipose tissue
6
2
1
visceral abdominal adipose tissue
3
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cell line
GM12878
54
primary cell
mesenchymal stem cell of adipose
1
1
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