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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
13
ChIP-seq
4
ATAC-seq
small RNA-seq
Assay category
396
Transcription
13
DNA binding
4
DNA accessibility
Target of assay
12
transcription factor
1
histone
1
histone modification
1
narrow histone mark
Date released
386
February, 2021
13
August, 2017
9
July, 2019
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
Available data
420
bigWig
418
bam
395
tsv
21
fastq
13
bed narrowPeak
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
413
Homo sapiens
Biosample type
412
tissue
1
primary cell
Organ
567
pancreas
559
connective tissue
413
adipose tissue
268
liver
241
epithelium
96
heart
95
brain
83
vasculature
81
blood vessel
70
bone element
68
artery
31
kidney
29
embryo
28
eye
24
musculature of body
12
limb
12
skeleton
5
nerve
4
vein
2
pericardium
1
blood
1
bodily fluid
1
pituitary gland
1
spleen
Project
413
AMP
Genome assembly (visualization)
413
hg19
412
GRCh38
Lab
413
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
small RNA-seq
files.file_type!
bigBed narrowPeak
BIOSAMPLE
ASSAY
413 results
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total RNA-seq
ChIP-seq
ATAC-seq
tissue
adipose tissue
382
2
white adipose tissue
12
subcutaneous adipose tissue
6
omental fat pad
4
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
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