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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
19
ChIP-seq
6
ATAC-seq
3
small RNA-seq
Assay category
399
Transcription
19
DNA binding
6
DNA accessibility
Target of assay
17
transcription factor
5
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
15
August, 2017
12
July, 2019
5
October, 2018
1
February, 2023
1
January, 2018
1
May, 2023
1
November, 2019
1
October, 2017
1
October, 2019
Available data
423
bigWig
421
bam
398
tsv
21
fastq
13
bed narrowPeak
10
bigBed narrowPeak
6
bed bed3+
3
bed broadPeak
bigBed broadPeak
1
tagAlign
Organism
424
Homo sapiens
Biosample type
422
tissue
2
primary cell
Organ
653
pancreas
581
connective tissue
562
liver
424
adipose tissue
295
epithelium
161
heart
149
vasculature
147
blood vessel
136
brain
89
artery
70
bone element
60
limb
58
kidney
55
blood
55
bodily fluid
40
musculature of body
30
eye
29
embryo
29
nerve
13
spleen
13
vein
12
skeleton
2
pericardium
1
pituitary gland
Project
424
AMP
Genome assembly (visualization)
424
hg19
422
GRCh38
Lab
424
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bigBed broadPeak
BIOSAMPLE
ASSAY
424 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
tissue
adipose tissue
382
1
3
white adipose tissue
12
subcutaneous adipose tissue
6
2
1
1
omental fat pad
4
3
1
1
visceral abdominal adipose tissue
3
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
1
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