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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
395
total RNA-seq
21
ChIP-seq
6
DNase-seq
4
ATAC-seq
3
small RNA-seq
Assay category
398
Transcription
21
DNA binding
10
DNA accessibility
Target of assay
18
transcription factor
6
RNA binding protein
3
histone
3
histone modification
3
narrow histone mark
Date released
386
February, 2021
15
August, 2017
12
July, 2019
7
June, 2019
5
October, 2018
1
January, 2018
1
November, 2018
1
October, 2017
1
October, 2019
Available data
429
bigWig
427
bam
398
tsv
46
bed narrowPeak
21
fastq
16
bigBed narrowPeak
10
bed bed3+
7
bed broadPeak
6
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
1
tagAlign
Organism
429
Homo sapiens
Biosample type
424
tissue
5
primary cell
Organ
617
liver
607
pancreas
567
connective tissue
423
adipose tissue
285
epithelium
175
heart
159
brain
153
vasculature
148
blood vessel
124
kidney
90
limb
85
artery
67
musculature of body
58
bone element
55
blood
55
bodily fluid
31
nerve
28
embryo
18
ureter
15
vein
14
spleen
6
eye
1
pericardium
1
pituitary gland
Project
429
AMP
Genome assembly (visualization)
429
hg19
428
GRCh38
Lab
429
AMP-T2D consortium
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
429 results
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total RNA-seq
ChIP-seq
DNase-seq
ATAC-seq
small RNA-seq
tissue
adipose tissue
381
1
2
white adipose tissue
12
omental fat pad
4
3
2
1
1
subcutaneous adipose tissue
6
2
1
1
retina
3
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primary cell
retinal pigment epithelial cell
2
1
mesenchymal stem cell of adipose
1
1
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