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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
31
ChIP-seq
7
ATAC-seq
3
DNase-seq
3
small RNA-seq
Assay category
399
Transcription
31
DNA binding
10
DNA accessibility
Target of assay
23
transcription factor
8
histone
8
histone modification
5
RNA binding protein
4
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
386
February, 2021
15
August, 2017
12
July, 2019
6
January, 2019
5
November, 2018
5
October, 2018
3
December, 2018
2
October, 2017
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2019
1
October, 2019
Available data
437
bigWig
435
bam
398
tsv
35
fastq
27
bed narrowPeak
23
bigBed narrowPeak
7
bed bed3+
4
bed broadPeak
3
bigBed broadPeak
1
tagAlign
Organism
440
Homo sapiens
Biosample type
438
tissue
2
primary cell
Organ
658
pancreas
625
liver
589
connective tissue
426
adipose tissue
311
epithelium
188
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
440
AMP
Genome assembly (visualization)
440
GRCh38
440
hg19
Lab
440
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
BIOSAMPLE
ASSAY
440 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
tissue
adipose tissue
382
1
3
spleen
12
1
1
white adipose tissue
12
omental fat pad
4
3
1
2
1
subcutaneous adipose tissue
6
2
1
1
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primary cell
mesenchymal stem cell of adipose
1
1
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