Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
total RNA-seq
31
ChIP-seq
7
ATAC-seq
3
DNase-seq
3
small RNA-seq
Assay category
31
DNA binding
10
DNA accessibility
3
Transcription
Target of assay
23
transcription factor
8
histone
8
histone modification
5
RNA binding protein
4
broad histone mark
4
narrow histone mark
3
other context
3
other post-translational modification
Date released
15
August, 2017
6
January, 2019
5
November, 2018
5
October, 2018
3
December, 2018
3
July, 2019
2
October, 2017
1
February, 2023
1
January, 2018
1
June, 2019
1
November, 2019
1
October, 2019
Available data
42
bigWig
40
bam
35
fastq
27
bed narrowPeak
23
bigBed narrowPeak
7
bed bed3+
4
bed broadPeak
3
bigBed broadPeak
3
tsv
1
tagAlign
Organism
44
Homo sapiens
Biosample type
43
tissue
1
primary cell
Organ
466
liver
328
pancreas
235
epithelium
159
brain
121
connective tissue
119
heart
118
kidney
107
vasculature
101
blood vessel
92
limb
69
musculature of body
55
blood
55
bodily fluid
39
artery
34
eye
30
adipose tissue
27
nerve
18
ureter
17
vein
15
embryo
14
spleen
12
bone element
12
skeleton
1
pericardium
1
pituitary gland
Project
44
AMP
Genome assembly (visualization)
44
GRCh38
44
hg19
Lab
44
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
44 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
ATAC-seq
DNase-seq
small RNA-seq
tissue
spleen
12
1
1
white adipose tissue
12
omental fat pad
3
1
2
1
adipose tissue
1
3
subcutaneous adipose tissue
2
1
1
+ See 2 more…
primary cell
mesenchymal stem cell of adipose
1
See all biosamples
Download