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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
396
total RNA-seq
14
ChIP-seq
6
ATAC-seq
3
small RNA-seq
2
DNase-seq
Assay category
399
Transcription
14
DNA binding
8
DNA accessibility
Target of assay
17
transcription factor
RNA binding protein
2
histone
2
histone modification
2
narrow histone mark
Date released
386
February, 2021
15
August, 2017
12
July, 2019
1
February, 2023
1
January, 2018
1
June, 2019
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
1
October, 2019
Available data
418
bigWig
416
bam
398
tsv
16
fastq
8
bed narrowPeak
6
bed bed3+
5
bigBed narrowPeak
3
bed broadPeak
2
bigBed broadPeak
1
tagAlign
Organism
421
Homo sapiens
Biosample type
419
tissue
2
primary cell
Organ
649
pancreas
579
connective tissue
570
liver
421
adipose tissue
303
epithelium
182
heart
161
brain
160
vasculature
155
blood vessel
127
kidney
96
limb
92
artery
73
musculature of body
70
bone element
45
blood
45
bodily fluid
33
eye
31
nerve
29
embryo
18
ureter
17
vein
14
spleen
12
skeleton
2
pericardium
1
pituitary gland
Project
421
AMP
Genome assembly (visualization)
421
hg19
419
GRCh38
Lab
421
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
Audit category:
12
missing controlled_by
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
421 results
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total RNA-seq
ChIP-seq
ATAC-seq
small RNA-seq
DNase-seq
tissue
adipose tissue
382
1
3
white adipose tissue
12
omental fat pad
4
1
1
2
subcutaneous adipose tissue
6
1
1
visceral abdominal adipose tissue
3
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primary cell
mesenchymal stem cell of adipose
1
1
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