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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
20
ATAC-seq
2
Capture-C
1
ChIP-seq
1
RRBS
1
total RNA-seq
Assay category
20
DNA accessibility
1
DNA binding
1
DNA methylation
1
Transcription
Target of assay
1
histone
1
histone modification
1
narrow histone mark
Date released
10
February, 2023
4
August, 2021
4
February, 2021
3
October, 2019
1
August, 2017
1
January, 2018
1
July, 2019
1
May, 2023
Available data
567
bigWig
bam
474
tsv
74
bed narrowPeak
73
fastq
27
bigBed narrowPeak
26
bed bed3+
9
bed broadPeak
8
bigBed broadPeak
6
bed bed3
4
bed bedgraph
1
bed bedMethyl
1
bigBed bedMethyl
hdf5
1
tagAlign
Organism
25
Homo sapiens
Biosample type
19
in vitro differentiated cells
5
tissue
1
primary cell
Organ
39
liver
28
eye
26
epithelium
25
connective tissue
22
pancreas
20
musculature of body
6
brain
6
heart
5
adipose tissue
5
kidney
4
bone element
4
skeleton
4
vasculature
3
blood vessel
2
vein
1
blood
1
bodily fluid
1
pericardium
Project
25
AMP
Genome assembly (visualization)
25
hg19
1
GRCh38
Lab
21
AMP-T2D consortium
4
Struan F.A. Grant, CHOP
Audit category:
3
inconsistent ontology term
files.file_type!
hdf5
bam
BIOSAMPLE
ASSAY
25 results
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Clear Filters
ATAC-seq
Capture-C
ChIP-seq
RRBS
total RNA-seq
in vitro differentiated cells
adipocyte
8
1
chondrocyte
5
immature adipocyte
2
osteoblast
1
1
preadipocyte
1
tissue
adipose tissue
3
1
subcutaneous abdominal adipose tissue
1
primary cell
cardiac fibroblast
1
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