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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ChIP-seq
74
total RNA-seq
70
single cell RNA-seq
38
ATAC-seq
11
DNase-seq
8
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
144
Transcription
83
DNA binding
50
DNA accessibility
8
3D chromatin structure
6
DNA methylation
Target of assay
75
histone
75
histone modification
40
narrow histone mark
35
broad histone mark
6
RNA binding protein
6
transcription factor
2
control
Date released
61
September, 2018
33
April, 2018
33
July, 2018
27
October, 2019
26
February, 2021
17
August, 2017
14
November, 2019
13
July, 2019
12
February, 2023
12
June, 2019
6
March, 2020
6
November, 2017
5
December, 2019
5
May, 2021
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
October, 2022
2
October, 2018
1
June, 2018
Available data
265
bigWig
263
bam
157
fastq
145
tsv
127
bed narrowPeak
56
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
15
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
291
Homo sapiens
Biosample type
227
primary cell
52
cell line
in vitro differentiated cells
12
tissue
Organ
656
pancreas
611
liver
516
connective tissue
426
adipose tissue
291
epithelium
187
heart
165
vasculature
164
brain
159
blood vessel
129
kidney
96
limb
93
artery
73
musculature of body
70
bone element
55
blood
55
bodily fluid
34
eye
31
nerve
18
ureter
17
vein
14
spleen
12
skeleton
8
embryo
2
pericardium
1
pituitary gland
Project
284
AMP
4
T1D
3
HPAP
Genome assembly (visualization)
291
hg19
274
GRCh38
Lab
288
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
58
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
291 results
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ChIP-seq
total RNA-seq
single cell RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic beta cell
7
10
12
7
1
pancreatic alpha cell
7
10
12
6
1
pancreatic ductal cell
13
4
10
4
pancreatic acinar cell
8
4
12
5
1
endothelial cell of umbilical vein
12
2
2
1
+ See 17 more…
cell line
EndoC_BH1
13
33
3
1
glomerular visceral epithelial cell
1
1
tissue
pigmented layer of retina
12
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