Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
70
single cell RNA-seq
40
total RNA-seq
23
ATAC-seq
10
DNase-seq
7
Hi-C
6
RRBS
1
FAIRE-seq
Assay category
110
Transcription
70
DNA binding
34
DNA accessibility
7
3D chromatin structure
6
DNA methylation
Target of assay
63
histone
63
histone modification
34
narrow histone mark
29
broad histone mark
5
RNA binding protein
5
transcription factor
2
control
Date released
61
September, 2018
33
April, 2018
33
July, 2018
25
October, 2019
17
August, 2017
13
July, 2019
12
June, 2019
6
November, 2017
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
October, 2022
2
October, 2018
1
June, 2018
1
March, 2020
Available data
215
bigWig
214
bam
157
fastq
110
tsv
100
bed narrowPeak
55
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
15
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
227
Homo sapiens
Biosample type
227
primary cell
52
cell line
20
in vitro differentiated cells
12
tissue
Organ
227
epithelium
185
pancreas
34
connective tissue
31
vasculature
25
blood vessel
25
kidney
21
brain
17
vein
13
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
224
AMP
3
HPAP
Genome assembly (visualization)
227
hg19
225
GRCh38
Lab
224
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
8
inconsistent ontology term
4
audit script error
Audit category:
21
missing controlled_by
Audit category:
4
inconsistent control read length
BIOSAMPLE
ASSAY
227 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
RRBS
FAIRE-seq
primary cell
pancreatic beta cell
7
12
10
7
1
pancreatic alpha cell
7
12
10
6
1
pancreatic ductal cell
13
10
4
4
pancreatic acinar cell
8
12
4
5
1
endothelial cell of umbilical vein
12
2
2
1
+ See 17 more…
See all biosamples
Download