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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
7
Hi-C
6
RRBS
Assay category
7
3D chromatin structure
6
DNA methylation
Date released
8
July, 2019
3
October, 2022
1
March, 2020
1
October, 2019
Available data
215
bigWig
bam
157
fastq
110
tsv
100
bed narrowPeak
55
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
15
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
5
hic
4
bedpe bed3+
3
cool
3
tagAlign
2
hdf5
1
tar
Organism
13
Homo sapiens
Biosample type
13
primary cell
12
tissue
3
cell line
Organ
13
epithelium
5
vasculature
4
blood vessel
4
brain
3
kidney
3
pancreas
2
connective tissue
2
liver
2
vein
1
eye
1
heart
1
musculature of body
Project
10
AMP
3
HPAP
Genome assembly (visualization)
13
hg19
10
GRCh38
Lab
10
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
4
audit script error
1
inconsistent ontology term
files.file_type!
bam
BIOSAMPLE
ASSAY
13 results
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Hi-C
RRBS
primary cell
endothelial cell of umbilical vein
2
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
endothelial cell of hepatic sinusoid
1
epithelial cell of proximal tubule
1
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