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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
76
total RNA-seq
70
single cell RNA-seq
8
Hi-C
6
RRBS
4
ChIP-seq
2
ATAC-seq
Assay category
146
Transcription
8
3D chromatin structure
6
DNA methylation
4
DNA binding
2
DNA accessibility
Target of assay
2
broad histone mark
2
control
2
histone
2
histone modification
Date released
33
April, 2018
33
July, 2018
26
February, 2021
26
September, 2018
13
July, 2019
6
May, 2021
6
October, 2019
5
December, 2019
5
March, 2020
3
August, 2018
3
October, 2022
2
November, 2017
2
November, 2019
2
October, 2018
1
June, 2018
Available data
285
bigWig
283
bam
173
fastq
147
tsv
bed narrowPeak
70
bigBed narrowPeak
16
bed broadPeak
16
bigBed broadPeak
15
bed bed3+
6
bed bedMethyl
6
bigBed bedMethyl
6
hic
5
bedpe bed3+
5
tagAlign
3
cool
2
hdf5
1
tar
Organism
166
Homo sapiens
Biosample type
127
primary cell
37
cell line
2
in vitro differentiated cells
Organ
515
connective tissue
446
pancreas
413
adipose tissue
188
liver
166
epithelium
75
heart
68
vasculature
66
blood vessel
62
bone element
54
artery
23
brain
17
kidney
15
embryo
13
musculature of body
4
limb
4
nerve
4
skeleton
4
vein
2
pericardium
1
blood
1
bodily fluid
1
eye
Project
161
AMP
3
HPAP
2
T1D
Genome assembly (visualization)
166
hg19
156
GRCh38
Lab
163
AMP-T2D consortium
3
Klaus Kaestner, Upenn
Audit category:
39
inconsistent ontology term
4
audit script error
files.file_type!
bed narrowPeak
BIOSAMPLE
ASSAY
166 results
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total RNA-seq
single cell RNA-seq
Hi-C
RRBS
ChIP-seq
ATAC-seq
primary cell
pancreatic alpha cell
10
12
1
pancreatic beta cell
10
12
1
pancreatic acinar cell
4
12
1
pancreatic ductal cell
4
10
pancreatic delta cell
11
+ See 16 more…
cell line
EndoC_BH1
33
1
2
glomerular visceral epithelial cell
1
in vitro differentiated cells
endothelial cell
1
intermediate endothelial cell
1
See all biosamples
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