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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
19
ChIP-seq
3
total RNA-seq
2
Hi-C
2
RRBS
1
ATAC-seq
1
small RNA-seq
1
snATAC-seq
Assay category
34
DNA accessibility
19
DNA binding
4
Transcription
2
3D chromatin structure
2
DNA methylation
Target of assay
19
histone
19
histone modification
12
broad histone mark
7
narrow histone mark
Date released
32
June, 2019
15
August, 2017
6
May, 2019
4
March, 2020
2
July, 2019
1
January, 2018
1
May, 2022
Available data
56
bigWig
51
bed narrowPeak
45
bed broadPeak
42
bam
38
bigBed narrowPeak
33
bed bed3+
32
bigBed broadPeak
13
tagAlign
4
tsv
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
2
fastq
2
hic
1
txt
Organism
61
Homo sapiens
Biosample type
61
tissue
12
primary cell
Organ
482
connective tissue
424
adipose tissue
413
pancreas
268
liver
143
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
61
AMP
Genome assembly (visualization)
61
hg19
42
GRCh38
Lab
61
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
BIOSAMPLE
ASSAY
61 results
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Clear Filters
DNase-seq
ChIP-seq
total RNA-seq
Hi-C
RRBS
ATAC-seq
small RNA-seq
snATAC-seq
tissue
muscle of leg
13
6
skeletal muscle tissue
13
1
2
1
1
1
muscle of arm
17
psoas muscle
2
2
forelimb muscle
1
hindlimb muscle
1
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