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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
269
total RNA-seq
84
ChIP-seq
46
ATAC-seq
5
DNase-seq
3
Hi-C
2
FAIRE-seq
2
RRBS
2
small RNA-seq
Assay category
271
Transcription
84
DNA binding
53
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
65
histone
65
histone modification
37
broad histone mark
28
narrow histone mark
17
transcription factor
8
RNA binding protein
2
control
Date released
130
August, 2017
116
July, 2018
40
October, 2018
39
November, 2019
36
May, 2021
18
May, 2022
6
April, 2018
6
July, 2019
6
March, 2020
5
October, 2017
3
March, 2019
3
November, 2018
2
June, 2019
2
September, 2017
1
May, 2019
Available data
397
bam
367
bigWig
272
tsv
186
fastq
121
bed narrowPeak
60
bigBed narrowPeak
25
bed bed3+
17
bed broadPeak
12
tagAlign
4
bigBed broadPeak
3
hic
2
bed bedMethyl
2
bedpe bed3+
2
bigBed bedMethyl
1
bedpe
Organism
407
Homo sapiens
Biosample type
413
tissue
185
primary cell
58
cell line
2
in vitro differentiated cells
Organ
482
connective tissue
424
adipose tissue
413
pancreas
268
liver
143
brain
113
heart
96
limb
92
kidney
70
blood vessel
70
bone element
70
vasculature
61
musculature of body
31
nerve
30
eye
27
artery
18
ureter
14
spleen
12
epithelium
12
skeleton
1
pericardium
1
pituitary gland
Project
411
AMP
2
T1D
Genome assembly (visualization)
413
hg19
386
GRCh38
Lab
391
AMP-T2D consortium
18
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
1
Mark McCarthy, Oxford
1
Stephen Parker, UMich
Audit category:
10
missing controlled_by
Audit category:
5
inconsistent control read length
1
inconsistent assembly
BIOSAMPLE
ASSAY
413 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
Hi-C
FAIRE-seq
RRBS
small RNA-seq
tissue
islet of Langerhans
266
31
42
1
2
1
1
body of pancreas
2
26
4
2
2
pancreas
1
13
2
1
1
1
endocrine pancreas
14
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