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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
4
total RNA-seq
2
DNase-seq
1
ChIP-seq
1
RRBS
Assay category
4
Transcription
2
DNA accessibility
1
DNA binding
1
DNA methylation
Target of assay
histone
2
histone modification
2
narrow histone mark
1
RNA binding protein
1
transcription factor
Date released
5
July, 2019
3
June, 2019
Available data
7
bam
7
bigWig
4
tsv
3
bed narrowPeak
3
bigBed narrowPeak
2
bed bed3+
2
bed broadPeak
2
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
8
Homo sapiens
Biosample type
64
cell line
53
tissue
8
primary cell
1
in vitro differentiated cells
Organ
164
epithelium
127
pancreas
26
connective tissue
18
brain
17
vasculature
15
kidney
12
blood vessel
10
liver
8
heart
5
vein
4
musculature of body
3
eye
2
adipose tissue
2
artery
1
pericardium
Project
8
AMP
Genome assembly (visualization)
8
GRCh38
8
hg19
Lab
8
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
8 results
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total RNA-seq
DNase-seq
ChIP-seq
RRBS
primary cell
cardiac fibroblast
2
1
1
cardiac atrium fibroblast
1
cardiac ventricle fibroblast
1
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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