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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
ChIP-seq
22
DNase-seq
5
total RNA-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
98
DNA binding
24
DNA accessibility
12
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
117
histone
117
histone modification
92
narrow histone mark
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
75
October, 2019
20
June, 2019
17
July, 2019
13
November, 2017
10
May, 2019
2
November, 2018
1
February, 2023
1
October, 2017
Available data
134
bigWig
130
bam
116
bed narrowPeak
43
bigBed narrowPeak
36
tagAlign
33
bed broadPeak
28
bigBed broadPeak
25
bed bed3+
12
fastq
12
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
139
Homo sapiens
Biosample type
118
tissue
21
primary cell
Organ
595
liver
585
pancreas
573
connective tissue
426
adipose tissue
269
epithelium
151
heart
139
brain
122
vasculature
116
blood vessel
114
kidney
79
artery
70
bone element
62
limb
57
musculature of body
55
blood
55
bodily fluid
34
eye
25
embryo
18
ureter
15
nerve
12
skeleton
10
spleen
10
vein
2
pericardium
1
pituitary gland
Project
139
AMP
Genome assembly (visualization)
156
GRCh38
139
hg19
Lab
139
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
139 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
3
14
1
1
1
angular gyrus
7
temporal lobe
5
1
1
frontal cortex
2
1
1
1
superior frontal gyrus
4
+ See 66 more…
primary cell
astrocyte of the cerebellum
3
1
1
brain microvascular endothelial cell
3
1
1
choroid plexus epithelial cell
3
1
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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