Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
149
ATAC-seq
68
ChIP-seq
26
Hi-C
19
RRBS
5
FAIRE-seq
4
pCHi-C
2
Capture-C
2
DNase-seq
2
total RNA-seq
1
snATAC-seq
Assay category
68
DNA binding
Target of assay
histone
68
histone modification
48
transcription factor
36
broad histone mark
32
narrow histone mark
20
control
6
RNA binding protein
2
chromatin remodeller
Date released
52
November, 2017
11
August, 2021
3
May, 2021
2
August, 2017
Available data
68
bigWig
54
bam
54
fastq
44
bed narrowPeak
33
bigBed narrowPeak
13
bed broadPeak
13
bigBed broadPeak
3
tar
2
tagAlign
Organism
68
Homo sapiens
Biosample type
60
cell line
8
primary cell
Organ
60
liver
3
brain
2
epithelium
2
vasculature
1
blood vessel
Project
68
AMP
Genome assembly (visualization)
522
hg19
GRCh38
Lab
54
AMP-T2D consortium
11
Bing Ren, UCSD
3
Kyle Gaulton, UCSD
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
target.investigated_as!
histone
assembly!
GRCh38
BIOSAMPLE
ASSAY
68 results
search-icon
table-tab-icon
Clear Filters
ChIP-seq
cell line
HepG2
60
primary cell
CD8-positive, alpha-beta T cell
3
skeletal muscle myoblast
2
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
choroid plexus epithelial cell
1
Download