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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
104
ATAC-seq
60
ChIP-seq
17
Hi-C
9
RRBS
4
FAIRE-seq
3
pCHi-C
2
Capture-C
1
snATAC-seq
Assay category
109
DNA accessibility
60
DNA binding
17
3D chromatin structure
9
DNA methylation
Target of assay
47
transcription factor
histone
36
histone modification
22
narrow histone mark
14
broad histone mark
13
control
5
RNA binding protein
2
chromatin remodeller
Date released
49
November, 2017
45
February, 2023
39
May, 2022
17
August, 2021
15
March, 2020
8
July, 2019
6
October, 2019
5
February, 2021
5
May, 2021
4
August, 2017
3
January, 2018
2
November, 2019
1
March, 2019
1
November, 2018
Available data
117
bed narrowPeak
104
bigWig
72
fastq
71
bam
39
bigBed narrowPeak
17
bedpe bed3+
17
hic
12
bed broadPeak
12
bigBed broadPeak
10
bed bed3
9
bed bedMethyl
9
bigBed bedMethyl
8
bed bed3+
7
bed bedgraph
4
txt
3
tar
2
ibed
2
tsv
1
bedpe
1
tagAlign
Organism
200
Homo sapiens
Biosample type
101
tissue
primary cell
66
cell line
33
in vitro differentiated cells
Organ
84
liver
30
pancreas
27
eye
22
connective tissue
15
epithelium
6
musculature of body
4
bone element
4
heart
4
skeleton
3
adipose tissue
3
brain
3
kidney
1
blood
1
blood vessel
1
bodily fluid
1
pericardium
1
vasculature
Project
200
AMP
Genome assembly (visualization)
2032
hg19
GRCh38
5
hg18
Lab
136
AMP-T2D consortium
23
Kyle Gaulton, UCSD
20
Karen Mohlke, UNC
13
Bing Ren, UCSD
7
Struan F.A. Grant, CHOP
1
Katalin Susztak, Upenn
Audit category:
12
inconsistent ontology term
1
audit script error
Audit category:
7
missing controlled_by
Audit category:
2
inconsistent control read length
2
inconsistent control run_type
target.investigated_as!
histone
assembly!
GRCh38
biosample_type!
primary cell
BIOSAMPLE
ASSAY
200 results
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ATAC-seq
ChIP-seq
Hi-C
RRBS
FAIRE-seq
pCHi-C
Capture-C
snATAC-seq
tissue
islet of Langerhans
20
2
1
1
liver
20
1
1
retina
15
pigmented layer of retina
12
skeletal muscle tissue
1
2
1
+ See 15 more…
cell line
HepG2
60
1
1
EndoC_BH1
2
1
GM12878
1
in vitro differentiated cells
adipocyte
8
1
embryonic stem cell
6
chondrocyte
5
cardiomyocytes (cardiac muscle cell)
2
1
immature adipocyte
2
+ See 6 more…
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