Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
98
total RNA-seq
3
Hi-C
Assay category
98
Transcription
3
3D chromatin structure
Target of assay
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
51
May, 2021
45
May, 2020
3
October, 2022
2
March, 2020
Available data
98
bam
98
bigWig
98
tsv
3
bedpe bed3+
3
cool
3
hic
Organism
101
Homo sapiens
Biosample type
99
primary cell
2
cell line
Organ
5
epithelium
5
pancreas
Project
AMP
98
T1D
3
HPAP
Genome assembly (visualization)
109
GRCh38
101
hg19
Lab
96
Kyle Gaulton, UCSD
3
Klaus Kaestner, Upenn
2
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
3
audit script error
target.investigated_as!
histone
biosample_type!
in vitro differentiated cells
award.project!
AMP
BIOSAMPLE
ASSAY
101 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
Hi-C
primary cell
monocyte
53
B cell
2
CD8-positive, alpha-beta T cell
2
T follicular helper cell
2
T-helper 1 cell
2
+ See 23 more…
cell line
EndoC_BH1
2
See all biosamples
Download