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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
ATAC-seq
9
ChIP-seq
8
DNase-seq
5
Hi-C
1
FAIRE-seq
Assay category
Transcription
20
DNA accessibility
9
DNA binding
5
3D chromatin structure
Target of assay
histone
67
histone modification
43
broad histone mark
24
narrow histone mark
8
transcription factor
4
RNA binding protein
1
control
Date released
12
February, 2021
7
October, 2019
4
July, 2019
4
June, 2019
3
May, 2019
2
March, 2020
2
November, 2017
Available data
29
bam
28
bed narrowPeak
23
bigWig
13
bigBed narrowPeak
10
bed bed3+
9
bed broadPeak
9
bigBed broadPeak
4
tagAlign
3
hic
2
bedpe bed3+
2
fastq
2
hdf5
1
tar
Organism
34
Homo sapiens
Biosample type
12
cell line
12
tissue
10
primary cell
Organ
381
liver
110
pancreas
87
kidney
79
connective tissue
75
epithelium
56
heart
54
blood
54
bodily fluid
44
limb
40
musculature of body
39
vasculature
35
brain
34
blood vessel
33
eye
25
adipose tissue
19
artery
18
ureter
12
bone element
12
skeleton
8
spleen
5
vein
4
embryo
3
nerve
1
pericardium
Project
34
AMP
Genome assembly (visualization)
64
GRCh38
34
hg19
Lab
34
AMP-T2D consortium
Audit category:
1
audit script error
target.investigated_as!
histone
assay_slims!
Transcription
BIOSAMPLE
ASSAY
34 results
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ATAC-seq
ChIP-seq
DNase-seq
Hi-C
FAIRE-seq
cell line
smooth muscle cell of the coronary artery
8
4
tissue
coronary artery
1
1
2
tibial artery
1
2
ascending aorta
1
1
thoracic aorta
1
1
aorta
1
primary cell
endothelial cell of umbilical vein
2
2
1
brain microvascular endothelial cell
2
1
1
endothelial cell of hepatic sinusoid
1
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