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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
4
total RNA-seq
3
RRBS
2
Hi-C
2
small RNA-seq
1
ATAC-seq
1
snATAC-seq
Assay category
35
DNA accessibility
6
Transcription
3
DNA methylation
2
3D chromatin structure
Target of assay
histone
27
histone modification
16
broad histone mark
11
narrow histone mark
Date released
33
June, 2019
5
July, 2019
4
March, 2020
2
August, 2017
1
January, 2018
1
May, 2022
Available data
40
bigWig
39
bam
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
6
tsv
3
bed bedMethyl
3
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
46
Homo sapiens
Biosample type
42
tissue
4
primary cell
Organ
554
connective tissue
543
liver
516
pancreas
424
adipose tissue
221
epithelium
126
heart
99
kidney
97
vasculature
92
blood vessel
73
artery
70
bone element
54
blood
54
bodily fluid
48
limb
47
brain
46
musculature of body
33
eye
18
embryo
18
ureter
12
skeleton
8
spleen
7
nerve
5
vein
2
pericardium
Project
46
AMP
Genome assembly (visualization)
46
hg19
40
GRCh38
Lab
46
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
target.investigated_as!
histone
BIOSAMPLE
ASSAY
46 results
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DNase-seq
total RNA-seq
RRBS
Hi-C
small RNA-seq
ATAC-seq
snATAC-seq
tissue
muscle of arm
17
muscle of leg
13
skeletal muscle tissue
1
2
1
1
1
psoas muscle
2
2
forelimb muscle
1
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primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
1
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