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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
22
DNase-seq
6
ChIP-seq
5
total RNA-seq
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
RRBS
1
ATAC-seq
1
FAIRE-seq
Assay category
24
DNA accessibility
8
Transcription
6
DNA binding
3
3D chromatin structure
2
DNA methylation
Target of assay
117
histone
histone modification
92
narrow histone mark
25
broad histone mark
6
control
3
RNA binding protein
3
transcription factor
Date released
20
June, 2019
13
July, 2019
6
November, 2017
2
November, 2018
1
February, 2023
1
October, 2019
Available data
40
bigWig
37
bam
26
bed narrowPeak
26
bigBed narrowPeak
25
bed bed3+
25
bed broadPeak
25
bigBed broadPeak
8
fastq
8
tsv
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
43
Homo sapiens
Biosample type
25
tissue
18
primary cell
Organ
551
connective tissue
539
liver
514
pancreas
421
adipose tissue
221
epithelium
125
heart
98
kidney
97
vasculature
92
blood vessel
73
artery
70
bone element
54
blood
54
bodily fluid
48
limb
44
musculature of body
43
brain
33
eye
18
embryo
18
ureter
12
skeleton
8
spleen
7
nerve
5
vein
2
pericardium
Project
43
AMP
Genome assembly (visualization)
45
GRCh38
43
hg19
Lab
43
AMP-T2D consortium
target.investigated_as!
histone modification
assay_title!
small RNA-seq
BIOSAMPLE
ASSAY
43 results
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DNase-seq
ChIP-seq
total RNA-seq
Hi-C
single cell RNA-seq
RRBS
ATAC-seq
FAIRE-seq
tissue
brain
14
1
1
1
frontal cortex
2
1
1
cerebellum
1
cerebellum (Hemisphere)
1
diencephalon
1
+ See 1 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
1
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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