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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
705
ChIP-seq
Assay category
705
DNA binding
Target of assay
706
histone modification
705
histone
399
transcription factor
370
narrow histone mark
335
broad histone mark
85
recombinant protein
84
RNA binding protein
27
control
23
chromatin remodeller
5
other context
5
other post-translational modification
Date released
171
October, 2019
115
May, 2021
97
August, 2017
92
May, 2019
60
April, 2019
32
September, 2018
30
October, 2018
27
May, 2020
24
November, 2017
19
June, 2019
10
November, 2019
7
December, 2017
6
August, 2021
6
January, 2019
6
October, 2017
3
March, 2020
Available data
703
bigWig
684
bed narrowPeak
648
bam
326
bigBed narrowPeak
214
tagAlign
162
fastq
65
bed broadPeak
30
bigBed broadPeak
17
bed bed3+
1
tagAlign bed3+
Organism
699
Homo sapiens
Biosample type
437
tissue
230
primary cell
in vitro differentiated cells
36
cell line
2
stem cell
Organ
141
pancreas
117
brain
75
epithelium
70
liver
68
vasculature
67
blood vessel
62
heart
48
limb
30
kidney
27
musculature of body
24
nerve
20
artery
12
vein
10
connective tissue
6
spleen
2
adipose tissue
1
blood
bodily fluid
1
eye
1
pituitary gland
Project
617
AMP
88
T1D
Genome assembly (visualization)
724
GRCh38
705
hg19
Lab
588
AMP-T2D consortium
114
Kyle Gaulton, UCSD
3
Bing Ren, UCSD
Audit category:
31
inconsistent ontology term
Audit category:
52
missing controlled_by
Audit category:
24
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
organ_slims!
bodily fluid
BIOSAMPLE
ASSAY
705 results
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Clear Filters
ChIP-seq
tissue
liver
44
heart left ventricle
24
tibial nerve
24
islet of Langerhans
22
kidney
20
+ See 99 more…
primary cell
monocyte
84
CD8-positive, alpha-beta T cell
30
pancreatic endocrine cell
23
pancreatic ductal cell
13
endothelial cell of umbilical vein
12
+ See 16 more…
cell line
HepG2
18
EndoC_BH1
12
Panc1
6
stem cell
hESC
2
See all biosamples
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