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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
371
ChIP-seq
Assay category
371
DNA binding
Target of assay
707
histone modification
706
histone
450
transcription factor
371
narrow histone mark
335
broad histone mark
94
RNA binding protein
85
recombinant protein
33
chromatin remodeller
27
control
5
other context
5
other post-translational modification
Date released
119
October, 2019
51
May, 2021
48
August, 2017
34
May, 2019
27
May, 2020
23
April, 2019
15
September, 2018
14
November, 2017
11
June, 2019
11
October, 2018
4
August, 2021
4
November, 2019
3
December, 2017
3
January, 2019
3
March, 2020
1
October, 2017
Available data
369
bigWig
358
bed narrowPeak
347
bam
134
tagAlign
128
bigBed narrowPeak
77
fastq
29
bed broadPeak
14
bigBed broadPeak
9
bed bed3+
1
tagAlign bed3+
Organism
369
Homo sapiens
Biosample type
239
tissue
112
primary cell
in vitro differentiated cells
19
cell line
1
stem cell
Organ
92
brain
68
pancreas
47
liver
40
epithelium
25
heart
25
vasculature
24
blood vessel
15
kidney
14
limb
11
musculature of body
8
nerve
6
artery
6
connective tissue
5
vein
2
adipose tissue
2
spleen
1
blood
1
bodily fluid
1
eye
1
pituitary gland
Project
327
AMP
44
T1D
Genome assembly (visualization)
371
hg19
355
GRCh38
Lab
319
AMP-T2D consortium
50
Kyle Gaulton, UCSD
2
Bing Ren, UCSD
Audit category:
17
inconsistent ontology term
Audit category:
28
missing controlled_by
Audit category:
14
inconsistent control read length
1
inconsistent assembly
1
inconsistent control run_type
biosample_type!
in vitro differentiated cells
BIOSAMPLE
ASSAY
371 results
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Clear Filters
ChIP-seq
tissue
liver
34
islet of Langerhans
12
kidney
10
heart left ventricle
9
tibial nerve
8
+ See 99 more…
primary cell
monocyte
40
pancreatic endocrine cell
12
CD8-positive, alpha-beta T cell
10
pancreatic ductal cell
7
skeletal muscle myoblast
6
+ See 16 more…
cell line
HepG2
9
EndoC_BH1
6
Panc1
3
GM12878
1
stem cell
hESC
1
See all biosamples
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