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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
6
total RNA-seq
4
DNase-seq
3
RRBS
Assay category
12
DNA binding
6
Transcription
4
DNA accessibility
3
DNA methylation
Target of assay
10
histone
10
histone modification
5
broad histone mark
5
narrow histone mark
2
RNA binding protein
2
transcription factor
Date released
8
October, 2019
7
July, 2019
6
June, 2019
4
May, 2019
Available data
22
bam
22
bigWig
16
bed narrowPeak
10
bigBed narrowPeak
6
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
3
bed bedMethyl
3
bigBed bedMethyl
Organism
25
Homo sapiens
Biosample type
92
tissue
25
primary cell
12
cell line
Organ
223
epithelium
182
pancreas
34
connective tissue
30
vasculature
25
kidney
24
blood vessel
21
brain
16
vein
13
liver
12
musculature of body
10
heart
4
eye
2
adipose tissue
2
artery
1
pericardium
Project
25
AMP
Genome assembly (visualization)
28
GRCh38
25
hg19
Lab
25
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
25 results
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ChIP-seq
total RNA-seq
DNase-seq
RRBS
primary cell
epithelial cell of proximal tubule
8
1
1
1
kidney epithelial cell
4
1
1
1
renal cortical epithelial cell
1
1
1
glomerular endothelial cell
1
1
kidney glomerular epithelial cell
1
kidney tubule cell
1
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