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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
45
ChIP-seq
Assay category
45
DNA binding
Target of assay
92
histone
92
histone modification
46
broad histone mark
45
narrow histone mark
37
transcription factor
32
control
6
RNA binding protein
3
chromatin remodeller
Date released
16
August, 2017
13
December, 2017
8
February, 2018
7
August, 2021
1
May, 2021
Available data
41
bam
40
bed narrowPeak
40
bigWig
33
fastq
12
tagAlign
5
bigBed narrowPeak
4
bed bed3+
Organism
45
Homo sapiens
Biosample type
324
tissue
65
primary cell
45
in vitro differentiated cells
19
cell line
1
stem cell
Organ
16
connective tissue
8
embryo
8
epithelium
5
liver
1
pancreas
Project
45
AMP
Genome assembly (visualization)
40
GRCh38
40
hg19
Lab
45
AMP-T2D consortium
Kyle Gaulton, UCSD
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
audit.ERROR.category!
inconsistent control
lab.title!
Kyle Gaulton, UCSD
BIOSAMPLE
ASSAY
45 results
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ChIP-seq
in vitro differentiated cells
adipocyte
16
neural progenitor cell
7
pancreatic endoderm
6
hepatocyte
5
Hepatic endoderm
2
definitive endodermal cell
2
primitive gut cell
2
Posterior foregut
1
embryonic stem cell
1
endocrine cell
1
pancreatic PP cell
1
posterior foregut
1
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