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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
279
ChIP-seq
155
total RNA-seq
ATAC-seq
102
single cell RNA-seq
31
DNase-seq
17
pCHi-C
10
RRBS
8
snATAC-seq
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
279
DNA binding
259
Transcription
40
DNA accessibility
11
DNA methylation
6
3D chromatin structure
Target of assay
237
histone
237
histone modification
122
broad histone mark
115
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
193
May, 2021
59
September, 2018
56
August, 2017
55
June, 2019
48
July, 2018
47
May, 2020
43
April, 2018
31
July, 2019
31
October, 2019
9
November, 2017
8
January, 2021
5
December, 2019
5
May, 2019
5
November, 2020
4
August, 2021
3
August, 2018
3
June, 2018
2
February, 2021
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
535
bigWig
525
bam
256
bed narrowPeak
252
tsv
218
fastq
100
tagAlign
87
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
csv
2
hic
1
bedpe bed3+
1
tar
Organism
612
Homo sapiens
Biosample type
2508
tissue
633
cell line
612
primary cell
350
in vitro differentiated cells
10
stem cell
Organ
230
epithelium
172
pancreas
37
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
musculature of body
13
heart
13
liver
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
407
AMP
204
T1D
1
ITG
Genome assembly (visualization)
540
hg19
487
GRCh38
Lab
372
AMP-T2D consortium
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
42
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
assay_title!
ATAC-seq
lab.title!
Klaus Kaestner, Upenn
BIOSAMPLE
ASSAY
612 results
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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
DNase-seq
pCHi-C
RRBS
snATAC-seq
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
1
1
CD8-positive, alpha-beta T cell
33
4
1
pancreatic alpha cell
13
10
12
pancreatic beta cell
13
10
12
pancreatic ductal cell
13
4
10
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