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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
356
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
57
pCHi-C
55
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
356
Transcription
55
DNA accessibility
Target of assay
3
control
Date released
112
August, 2021
55
May, 2022
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
19
April, 2020
16
January, 2021
13
February, 2021
3
August, 2018
3
February, 2023
3
July, 2019
3
June, 2018
3
May, 2023
1
December, 2019
1
November, 2018
1
September, 2018
Available data
198
tsv
128
fastq
100
bam
100
bigWig
73
zippedFastqFolder
8
txt
3
csv
Organism
410
Homo sapiens
Biosample type
216
primary cell
195
tissue
Organ
93
heart
84
pancreas
70
epithelium
65
kidney
19
lung
8
blood
8
bodily fluid
6
blood vessel
6
vasculature
4
connective tissue
3
brain
2
artery
1
liver
1
musculature of body
Project
221
AMP
106
HPAP
47
KPMP
19
LungMap
18
T1D
Genome assembly (visualization)
100
GRCh38
100
hg19
Lab
204
AMP-T2D consortium
106
Klaus Kaestner, Upenn
47
KPMP
19
Xin Sun, UCSD
18
Kyle Gaulton, UCSD
17
Katalin Susztak, Upenn
Audit category:
audit script error
9
inconsistent ontology term
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
411 results
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single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
85
21
pancreatic acinar cell
12
pancreatic alpha cell
12
pancreatic beta cell
12
pancreatic delta cell
11
+ See 15 more…
tissue
kidney
59
6
lung
9
10
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
+ See 15 more…
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