Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1413
total RNA-seq
531
ATAC-seq
308
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
57
pCHi-C
55
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
308
Transcription
Target of assay
3
control
Date released
106
August, 2021
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
34
May, 2022
13
February, 2021
9
April, 2020
3
August, 2018
3
July, 2019
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
November, 2018
1
September, 2018
Available data
150
tsv
80
fastq
52
bam
52
bigWig
52
zippedFastqFolder
8
txt
3
csv
Organism
308
Homo sapiens
Biosample type
169
tissue
139
primary cell
Organ
93
heart
59
kidney
37
epithelium
37
pancreas
9
lung
6
blood vessel
6
vasculature
3
brain
2
artery
2
connective tissue
1
liver
1
musculature of body
Project
167
AMP
85
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
52
GRCh38
52
hg19
Lab
156
AMP-T2D consortium
85
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
audit script error
3
inconsistent ontology term
audit.ERROR.category!
audit script error
month_released!
July, 2018
BIOSAMPLE
ASSAY
308 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
tissue
kidney
59
heart left ventricle
18
left cardiac atrium
18
right cardiac atrium
18
heart right ventricle
17
+ See 13 more…
primary cell
Langerhans cell
85
pancreatic acinar cell
7
pancreatic delta cell
7
pancreatic ductal cell
7
pancreatic cell
6
+ See 9 more…
See all biosamples
Download