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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1831
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
356
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
57
pCHi-C
55
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
55
DNA accessibility
Target of assay
5
control
5
nucleotide modification
Date released
21
May, 2022
16
January, 2021
10
April, 2020
10
November, 2020
6
August, 2021
2
February, 2023
Available data
21
zippedFastqFolder
Organism
64
Homo sapiens
Biosample type
30
tissue
29
primary cell
6
cell line
Organ
20
pancreas
10
lung
8
blood
8
bodily fluid
6
epithelium
6
kidney
Project
21
HPAP
18
T1D
16
AMP
10
LungMap
Lab
21
Klaus Kaestner, Upenn
18
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
10
Xin Sun, UCSD
6
Katalin Susztak, Upenn
Audit category:
audit script error
6
inconsistent ontology term
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
65 results
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snATAC-seq
MeRIP-seq
tissue
islet of Langerhans
6
4
lung
10
kidney
6
pancreas
4
primary cell
Langerhans cell
21
peripheral blood mononuclear cell
8
cell line
EndoC_BH1
6
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