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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
88
ChIP-seq
ATAC-seq
49
snATAC-seq
47
WGBS
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
342
Transcription
88
DNA binding
49
DNA accessibility
47
DNA methylation
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
44
narrow histone mark
Date released
153
May, 2021
95
May, 2022
88
February, 2023
56
September, 2020
47
September, 2023
45
May, 2020
19
April, 2020
18
February, 2021
16
January, 2021
7
March, 2020
5
March, 2023
Available data
186
bam
186
bigWig
132
fastq
114
zippedFastqFolder
104
tsv
88
bed narrowPeak
84
tagAlign
1
hic
Organism
544
Homo sapiens
Biosample type
450
primary cell
86
tissue
11
cell line
2
stem cell
Organ
123
pancreas
104
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
245
HPAP
233
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
187
GRCh38
186
hg19
Lab
245
Klaus Kaestner, Upenn
225
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
8
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
audit script error
9
inconsistent ontology term
audit.ERROR.category!
audit script error
award.project!
AMP
assay_title!
ATAC-seq
BIOSAMPLE
ASSAY
549 results
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total RNA-seq
single cell RNA-seq
ChIP-seq
snATAC-seq
WGBS
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
monocyte
53
84
1
Langerhans cell
85
21
pancreatic alpha cell
42
31
exocrine cell
39
pancreatic beta cell
11
16
+ See 36 more…
tissue
kidney
47
lung
9
10
islet of Langerhans
7
2
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
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