Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
197
total RNA-seq
141
single cell RNA-seq
ATAC-seq
49
snATAC-seq
47
WGBS
44
ChIP-seq
17
pCHi-C
3
CRISPR genome editing followed by DNA sequencing
2
HiChIP
1
CRISPR RNA-seq
1
CRISPRi RNA-seq
1
Hi-C
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
342
Transcription
49
DNA accessibility
47
DNA methylation
44
DNA binding
1
3D chromatin structure
Target of assay
88
histone
88
histone modification
44
broad histone mark
narrow histone mark
Date released
112
May, 2021
95
May, 2022
88
February, 2023
56
September, 2020
47
September, 2023
45
May, 2020
19
April, 2020
18
February, 2021
16
January, 2021
5
March, 2023
4
March, 2020
Available data
142
bam
142
bigWig
132
fastq
114
zippedFastqFolder
104
tsv
44
bed narrowPeak
44
tagAlign
1
hic
Organism
500
Homo sapiens
Biosample type
410
primary cell
84
tissue
9
cell line
2
stem cell
Organ
119
pancreas
102
epithelium
47
kidney
19
lung
8
blood
8
bodily fluid
1
bone element
1
bone marrow
1
connective tissue
1
thymus
Project
AMP
245
HPAP
189
T1D
47
KPMP
19
LungMap
4
community
1
ITG
Genome assembly (visualization)
143
GRCh38
142
hg19
Lab
245
Klaus Kaestner, Upenn
185
Kyle Gaulton, UCSD
47
KPMP
19
Xin Sun, UCSD
4
AMP-T2D consortium
4
Anna Gloyn, Oxford
1
ITG
Audit category:
audit script error
7
inconsistent ontology term
audit.ERROR.category!
audit script error
award.project!
AMP
assay_title!
ATAC-seq
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
505 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
single cell RNA-seq
snATAC-seq
WGBS
ChIP-seq
pCHi-C
CRISPR genome editing followed by DNA sequencing
HiChIP
CRISPR RNA-seq
CRISPRi RNA-seq
Hi-C
shRNA RNA-seq
siRNA RNA-seq
primary cell
Langerhans cell
85
21
monocyte
53
44
1
pancreatic alpha cell
42
31
exocrine cell
39
pancreatic beta cell
11
16
+ See 36 more…
tissue
kidney
47
lung
9
10
islet of Langerhans
7
6
pancreas
4
thymus
1
cell line
EndoC_BH1
2
3
2
EndoC-BH1
1
1
stem cell
SB Ad3.1
1
1
See all biosamples
Download