Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1871
ChIP-seq
1533
total RNA-seq
531
ATAC-seq
356
single cell RNA-seq
212
DNase-seq
85
RNA microarray
75
WGBS
57
pCHi-C
55
snATAC-seq
30
Hi-C
21
RRBS
18
small RNA-seq
10
MeRIP-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
Assay category
356
Transcription
75
DNA methylation
Target of assay
3
control
Date released
106
August, 2021
75
May, 2022
48
July, 2018
47
September, 2023
43
April, 2018
40
September, 2020
19
February, 2021
15
July, 2019
9
April, 2020
9
August, 2017
8
November, 2018
3
August, 2018
3
June, 2018
3
May, 2023
1
December, 2019
1
February, 2023
1
September, 2018
Available data
204
tsv
145
fastq
118
bam
117
bigWig
93
zippedFastqFolder
17
bed bedMethyl
17
bigBed bedMethyl
8
txt
3
csv
Organism
431
Homo sapiens
Biosample type
234
primary cell
196
tissue
1
cell line
Organ
125
pancreas
117
epithelium
101
heart
59
kidney
10
connective tissue
9
lung
8
blood vessel
8
vasculature
6
adipose tissue
6
liver
3
brain
2
artery
2
musculature of body
2
spleen
1
limb
Project
243
AMP
132
HPAP
47
KPMP
9
LungMap
Genome assembly (visualization)
117
GRCh38
100
hg19
Lab
232
AMP-T2D consortium
132
Klaus Kaestner, Upenn
47
KPMP
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
9
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
files.file_type!
vcf
BIOSAMPLE
ASSAY
431 results
search-icon
table-tab-icon
Clear Filters
single cell RNA-seq
WGBS
primary cell
Langerhans cell
85
pancreatic alpha cell
12
31
pancreatic beta cell
12
16
pancreatic acinar cell
12
pancreatic delta cell
11
+ See 14 more…
tissue
kidney
59
heart left ventricle
18
4
heart right ventricle
17
2
right cardiac atrium
18
1
left cardiac atrium
18
+ See 20 more…
cell line
HepG2
1
See all biosamples
Download