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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
11
Hi-C
1
pCHi-C
Assay category
11
3D chromatin structure
Date released
8
March, 2020
2
August, 2021
1
August, 2018
November, 2019
1
October, 2019
Available data
3142
bam
2958
bigWig
1735
bed narrowPeak
1424
tsv
1320
fastq
1018
bigBed narrowPeak
395
tagAlign
318
bed broadPeak
281
bigBed broadPeak
266
bed bed3+
153
zippedFastqFolder
70
txt
64
xls
34
bed bedMethyl
34
bigBed bedMethyl
13
hic
12
bed bed3
12
bedpe bed3+
6
bed bedgraph
5
hdf5
4
tar
3
csv
1
bedpe
1
tagAlign bed3+
1
vcf
Organism
12
Homo sapiens
Biosample type
9
tissue
1
cell line
1
in vitro differentiated cells
1
primary cell
Organ
3
heart
2
blood vessel
2
liver
2
musculature of body
2
pancreas
2
vasculature
1
adipose tissue
1
connective tissue
1
epithelium
1
vein
Project
12
AMP
Genome assembly (visualization)
10
hg19
Lab
10
AMP-T2D consortium
2
Bing Ren, UCSD
Audit category:
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
inconsistent ontology term
month_released!
November, 2019
BIOSAMPLE
ASSAY
12 results
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Hi-C
pCHi-C
tissue
psoas muscle
2
aorta
1
heart
1
heart left ventricle
1
heart right ventricle
1
+ See 3 more…
cell line
HepG2
1
in vitro differentiated cells
white fat cell
1
primary cell
endothelial cell of umbilical vein
1
See all biosamples
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