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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
83
ATAC-seq
66
total RNA-seq
47
WGBS
10
MeRIP-seq
10
snATAC-seq
2
Hi-C
Assay category
93
DNA accessibility
66
Transcription
47
DNA methylation
2
3D chromatin structure
Target of assay
5
control
5
nucleotide modification
Date released
104
May, 2022
55
February, 2023
19
September, 2020
10
November, 2020
8
January, 2021
7
August, 2020
6
February, 2021
5
March, 2019
2
August, 2021
1
May, 2021
1
October, 2017
Available data
95
fastq
80
zippedFastqFolder
25
bam
18
bed narrowPeak
11
bigWig
7
tsv
6
txt
2
bed broadPeak
1
bedpe
1
bedpe bed3+
1
hic
Organism
218
Homo sapiens
Biosample type
149
primary cell
63
tissue
6
cell line
Organ
218
pancreas
191
kidney
155
epithelium
71
liver
19
lung
8
blood
8
bodily fluid
5
connective tissue
1
bone element
1
bone marrow
1
thymus
Project
149
HPAP
43
AMP
26
T1D
Genome assembly (visualization)
22
hg19
13
GRCh38
Lab
AMP-T2D consortium
149
Klaus Kaestner, Upenn
51
Kyle Gaulton, UCSD
10
Rohit N. Kulkarni, M.D., Ph.D.
4
Bing Ren, UCSD
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
1
Stephen Parker, UMich
Audit category:
6
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
lab.title!
AMP-T2D consortium
BIOSAMPLE
ASSAY
218 results
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Clear Filters
ATAC-seq
total RNA-seq
WGBS
MeRIP-seq
snATAC-seq
Hi-C
primary cell
pancreatic alpha cell
29
42
31
pancreatic beta cell
16
11
16
pancreatic acinar cell
4
tissue
islet of Langerhans
34
12
4
6
2
pancreas
1
4
cell line
EndoC_BH1
6
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