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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
1037
total RNA-seq
570
ChIP-seq
252
ATAC-seq
178
DNase-seq
169
single cell RNA-seq
85
RNA microarray
27
WGBS
26
snATAC-seq
25
pCHi-C
16
Hi-C
16
small RNA-seq
11
RRBS
4
FAIRE-seq
4
MeRIP-seq
3
snDrop-seq
Assay category
1222
Transcription
570
DNA binding
460
DNA accessibility
38
DNA methylation
16
3D chromatin structure
Target of assay
616
histone modification
615
histone
narrow histone mark
293
broad histone mark
184
control
94
transcription factor
28
RNA binding protein
3
other context
3
other post-translational modification
2
chromatin remodeller
2
nucleotide modification
Date released
540
February, 2021
234
August, 2017
229
August, 2021
166
May, 2020
163
June, 2019
120
July, 2018
113
October, 2019
95
February, 2023
82
May, 2019
77
July, 2019
65
May, 2022
63
October, 2018
57
April, 2019
54
November, 2017
47
September, 2023
46
December, 2017
40
May, 2021
40
November, 2019
38
March, 2020
26
November, 2018
25
February, 2020
25
May, 2024
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
6
April, 2018
6
September, 2017
5
January, 2019
5
March, 2019
4
November, 2020
2
January, 2018
1
December, 2019
Available data
1650
bam
1491
bigWig
1069
tsv
707
bed narrowPeak
448
bigBed narrowPeak
333
fastq
198
bed bed3+
195
bed broadPeak
176
bigBed broadPeak
151
txt
116
tagAlign
64
xls
25
bed bedMethyl
25
bigBed bedMethyl
11
hic
10
bedpe bed3+
5
bed bed3
1
bedpe
1
csv
Organism
2416
Homo sapiens
Biosample type
2423
tissue
942
primary cell
643
cell line
337
in vitro differentiated cells
9
stem cell
Organ
533
connective tissue
475
adipose tissue
467
pancreas
317
liver
282
kidney
275
heart
158
bone element
137
brain
115
blood vessel
115
vasculature
107
limb
72
musculature of body
67
artery
54
eye
35
nerve
22
spleen
20
lung
18
ureter
16
skeleton
14
epithelium
2
intestine
2
thymus
1
adrenal gland
1
esophagus
1
gonad
1
large intestine
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
2328
AMP
47
KPMP
29
T1D
19
LungMap
Genome assembly (visualization)
1595
GRCh38
1503
hg19
Lab
2087
AMP-T2D consortium
142
Katalin Susztak, Upenn
52
Kyle Gaulton, UCSD
47
KPMP
40
Karen Mohlke, UNC
25
Patrick T. Ellinor, Broad
19
Xin Sun, UCSD
4
Bing Ren, UCSD
4
Rohit N. Kulkarni, M.D., Ph.D.
2
Mark McCarthy, Oxford
1
Maike Sander, UCSD
Audit category:
89
inconsistent ontology term
27
inconsistent control
audit script error
Audit category:
19
missing controlled_by
Audit category:
3
inconsistent control read length
1
inconsistent assembly
audit.ERROR.category!
audit script error
month_released!
October, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
2423 results
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total RNA-seq
ChIP-seq
ATAC-seq
DNase-seq
single cell RNA-seq
RNA microarray
WGBS
snATAC-seq
pCHi-C
Hi-C
small RNA-seq
RRBS
FAIRE-seq
MeRIP-seq
snDrop-seq
tissue
islet of Langerhans
298
34
67
1
6
4
3
1
1
4
adipose tissue
382
1
3
3
1
liver
167
103
20
2
1
3
1
1
1
1
kidney
49
17
75
13
59
6
1
1
1
bone element
84
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