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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
26
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
small RNA-seq
1
ATAC-seq
1
WGBS
1
pCHi-C
1
single cell RNA-seq
Assay category
34
DNA accessibility
26
DNA binding
9
Transcription
6
3D chromatin structure
6
DNA methylation
Target of assay
33
histone
33
histone modification
20
broad histone mark
narrow histone mark
6
control
Date released
39
June, 2019
19
August, 2017
10
July, 2019
5
March, 2020
5
May, 2019
2
February, 2020
1
January, 2018
1
May, 2022
Available data
57
bigWig
51
bam
49
bed narrowPeak
41
bed broadPeak
41
bigBed narrowPeak
33
bed bed3+
33
bigBed broadPeak
10
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
Organism
82
Homo sapiens
Biosample type
72
tissue
10
primary cell
Organ
864
pancreas
731
liver
650
connective tissue
478
adipose tissue
470
epithelium
353
heart
332
kidney
209
vasculature
204
blood vessel
159
bone element
155
brain
135
artery
107
limb
82
musculature of body
68
blood
68
bodily fluid
58
eye
35
nerve
29
embryo
22
spleen
20
lung
18
ureter
16
skeleton
15
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
82
AMP
Genome assembly (visualization)
61
hg19
48
GRCh38
Lab
82
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
audit script error
audit.ERROR.category!
audit script error
month_released!
October, 2017
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
82 results
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DNase-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
WGBS
pCHi-C
single cell RNA-seq
tissue
skeletal muscle tissue
15
1
4
1
1
1
muscle of leg
13
5
1
muscle of arm
17
gastrocnemius medialis
4
1
psoas muscle
2
2
1
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primary cell
skeletal muscle satellite cell
5
1
1
skeletal muscle cell
1
1
1
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