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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
247
ChIP-seq
221
total RNA-seq
186
ATAC-seq
186
single cell RNA-seq
47
WGBS
31
DNase-seq
29
snATAC-seq
17
pCHi-C
10
RRBS
6
Hi-C
2
small RNA-seq
1
DNAme array
1
FAIRE-seq
Assay category
409
Transcription
247
DNA accessibility
247
DNA binding
58
DNA methylation
6
3D chromatin structure
Target of assay
205
histone
205
histone modification
105
broad histone mark
100
narrow histone mark
35
control
10
RNA binding protein
10
transcription factor
1
chromatin remodeller
Date released
206
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
September, 2018
59
August, 2017
59
September, 2020
55
June, 2019
48
July, 2018
43
April, 2018
33
October, 2019
31
July, 2019
21
February, 2021
9
November, 2017
8
January, 2021
7
August, 2020
6
November, 2020
5
December, 2019
5
May, 2019
5
September, 2017
4
August, 2021
3
August, 2018
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
541
bigWig
537
bam
309
fastq
249
bed narrowPeak
244
tsv
153
zippedFastqFolder
100
tagAlign
95
bigBed narrowPeak
49
bed broadPeak
49
bigBed broadPeak
37
bed bed3+
10
bed bedMethyl
10
bigBed bedMethyl
4
hdf5
2
hic
1
bed bed3
1
bedpe bed3+
1
csv
1
tar
Organism
984
Homo sapiens
Biosample type
2728
tissue
984
primary cell
662
cell line
392
in vitro differentiated cells
10
stem cell
Organ
341
epithelium
271
pancreas
39
connective tissue
36
kidney
36
vasculature
30
blood vessel
21
brain
21
vein
14
liver
14
musculature of body
13
heart
8
blood
8
bodily fluid
5
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
485
AMP
294
HPAP
204
T1D
1
ITG
Genome assembly (visualization)
552
hg19
464
GRCh38
Lab
450
AMP-T2D consortium
294
Klaus Kaestner, Upenn
239
Kyle Gaulton, UCSD
1
ITG
Audit category:
54
inconsistent ontology term
audit script error
Audit category:
12
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
month_released!
September, 2018
BIOSAMPLE
ASSAY
984 results
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Clear Filters
ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
DNase-seq
snATAC-seq
pCHi-C
RRBS
Hi-C
small RNA-seq
DNAme array
FAIRE-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
13
42
32
12
31
Langerhans cell
85
21
pancreatic beta cell
13
11
19
12
16
CD8-positive, alpha-beta T cell
33
4
2
1
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