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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
205
total RNA-seq
151
ChIP-seq
48
single cell RNA-seq
5
ATAC-seq
2
DNase-seq
2
WGBS
Assay category
253
Transcription
151
DNA binding
7
DNA accessibility
2
DNA methylation
Target of assay
103
histone modification
102
histone
52
narrow histone mark
49
broad histone mark
46
transcription factor
7
RNA binding protein
3
chromatin remodeller
2
control
Date released
568
February, 2021
280
November, 2017
276
May, 2021
249
August, 2017
210
June, 2019
207
May, 2020
207
October, 2019
164
July, 2018
105
August, 2021
96
May, 2019
79
July, 2019
79
November, 2018
77
December, 2017
72
September, 2018
64
April, 2019
57
November, 2019
49
April, 2018
47
October, 2018
40
May, 2024
35
February, 2023
31
February, 2018
30
December, 2018
26
January, 2019
16
March, 2020
14
October, 2017
12
May, 2023
7
August, 2020
7
September, 2017
6
November, 2020
5
December, 2019
3
August, 2018
3
June, 2018
3
September, 2020
2
March, 2019
1
March, 2023
Available data
413
bam
411
bigWig
299
fastq
253
tsv
118
bed narrowPeak
38
bigBed narrowPeak
33
bed bed3+
19
bed broadPeak
17
tagAlign
13
bigBed broadPeak
2
bed bedMethyl
2
bigBed bedMethyl
Organism
407
Homo sapiens
Biosample type
274
tissue
90
primary cell
49
in vitro differentiated cells
Organ
305
pancreas
67
connective tissue
50
epithelium
19
liver
16
adipose tissue
Project
413
AMP
Genome assembly (visualization)
440
hg19
413
GRCh38
Lab
413
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
39
missing controlled_by
Audit category:
16
inconsistent control read length
3
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
BIOSAMPLE
ASSAY
413 results
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total RNA-seq
ChIP-seq
single cell RNA-seq
ATAC-seq
DNase-seq
WGBS
tissue
islet of Langerhans
205
21
1
liver
18
pancreas
12
white adipose tissue
12
adipose tissue
1
2
+ See 2 more…
primary cell
pancreatic beta cell
7
9
1
pancreatic alpha cell
7
7
1
skeletal muscle myoblast
13
pancreatic endocrine cell
12
pancreatic acinar cell
5
1
+ See 12 more…
in vitro differentiated cells
adipocyte
48
1
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