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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
total RNA-seq
18
small RNA-seq
15
RRBS
12
WGBS
8
Hi-C
6
ATAC-seq
3
single cell RNA-seq
2
FAIRE-seq
Assay category
80
DNA binding
27
DNA methylation
21
Transcription
8
3D chromatin structure
8
DNA accessibility
Target of assay
60
histone
60
histone modification
37
broad histone mark
23
narrow histone mark
17
control
6
transcription factor
4
RNA binding protein
Date released
406
November, 2017
322
August, 2017
283
October, 2019
245
August, 2021
218
June, 2019
217
May, 2021
173
May, 2022
151
May, 2020
138
February, 2021
120
May, 2019
112
February, 2023
94
December, 2017
88
November, 2018
80
April, 2019
74
October, 2018
64
July, 2019
49
March, 2020
48
July, 2018
47
September, 2018
47
September, 2023
43
April, 2018
43
September, 2020
41
November, 2019
40
May, 2024
35
December, 2018
25
January, 2019
24
February, 2018
23
October, 2017
19
April, 2020
16
January, 2021
14
May, 2023
12
November, 2020
11
September, 2017
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
3
June, 2018
1
December, 2019
1
October, 2022
Available data
117
bam
106
bigWig
72
bed narrowPeak
66
bigBed narrowPeak
23
bed bedMethyl
23
bigBed bedMethyl
21
tsv
4
bed bed3+
4
hdf5
Organism
144
Homo sapiens
Biosample type
126
tissue
18
primary cell
Organ
72
heart
29
kidney
14
brain
8
epithelium
8
musculature of body
7
vasculature
6
blood vessel
6
liver
5
connective tissue
5
limb
4
pancreas
3
adipose tissue
1
artery
1
eye
1
pericardium
Project
144
AMP
Genome assembly (visualization)
112
hg19
99
GRCh38
Lab
144
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
audit.ERROR.category!
audit script error
assay_title!
total RNA-seq
BIOSAMPLE
ASSAY
144 results
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Clear Filters
ChIP-seq
small RNA-seq
RRBS
WGBS
Hi-C
ATAC-seq
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
35
1
4
2
kidney
23
1
1
heart right ventricle
13
2
heart
9
1
1
gastrocnemius medialis
4
+ See 24 more…
primary cell
cerebellar granule cell
2
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
brain pericyte
1
+ See 12 more…
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