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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
73
ChIP-seq
31
total RNA-seq
16
small RNA-seq
12
WGBS
6
ATAC-seq
6
RRBS
4
Hi-C
2
FAIRE-seq
Assay category
73
DNA binding
47
Transcription
18
DNA methylation
8
DNA accessibility
4
3D chromatin structure
Target of assay
29
control
29
histone
29
histone modification
19
broad histone mark
15
transcription factor
11
RNA binding protein
10
narrow histone mark
Date released
540
February, 2021
279
August, 2017
242
October, 2019
229
August, 2021
193
May, 2020
163
June, 2019
120
July, 2018
115
May, 2019
95
February, 2023
82
November, 2017
80
April, 2019
77
July, 2019
73
October, 2018
65
May, 2022
48
December, 2017
47
September, 2023
40
March, 2020
40
May, 2021
40
May, 2024
40
November, 2019
26
November, 2018
25
February, 2020
23
October, 2017
19
April, 2020
15
May, 2023
8
January, 2021
7
December, 2018
7
January, 2019
6
April, 2018
6
September, 2017
5
March, 2019
4
November, 2020
2
January, 2018
1
December, 2019
Available data
137
bam
107
bigWig
57
fastq
51
bed narrowPeak
47
tsv
46
bigBed narrowPeak
14
bed bedMethyl
14
bigBed bedMethyl
Organism
150
Homo sapiens
Biosample type
150
tissue
33
primary cell
Organ
56
pancreas
33
adipose tissue
33
connective tissue
20
heart
11
brain
8
liver
7
blood vessel
7
musculature of body
7
vasculature
5
limb
4
kidney
1
artery
1
pericardium
Project
150
AMP
Genome assembly (visualization)
105
GRCh38
104
hg19
Lab
150
AMP-T2D consortium
Audit category:
inconsistent control read length
audit.ERROR.category!
audit script error
audit.WARNING.category!
inconsistent control read length
BIOSAMPLE
ASSAY
150 results
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Clear Filters
ChIP-seq
total RNA-seq
small RNA-seq
WGBS
ATAC-seq
RRBS
Hi-C
FAIRE-seq
tissue
body of pancreas
32
2
2
subcutaneous adipose tissue
12
4
1
endocrine pancreas
16
omental fat pad
11
4
1
heart left ventricle
2
4
2
1
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