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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
238
ChIP-seq
237
total RNA-seq
198
ATAC-seq
180
single cell RNA-seq
47
WGBS
29
snATAC-seq
25
DNase-seq
15
pCHi-C
9
RRBS
5
Hi-C
1
DNAme array
1
FAIRE-seq
1
small RNA-seq
Assay category
418
Transcription
253
DNA accessibility
238
DNA binding
57
DNA methylation
5
3D chromatin structure
Target of assay
229
histone
229
histone modification
118
broad histone mark
111
narrow histone mark
control
9
RNA binding protein
9
transcription factor
1
chromatin remodeller
Date released
202
May, 2021
147
May, 2020
134
May, 2022
88
February, 2023
73
September, 2018
59
September, 2020
46
August, 2017
46
July, 2018
41
April, 2018
33
June, 2019
30
October, 2019
20
July, 2019
18
February, 2021
8
January, 2021
7
August, 2020
6
November, 2017
5
December, 2019
5
September, 2017
4
May, 2019
3
August, 2018
3
August, 2021
3
June, 2018
2
October, 2018
1
March, 2020
1
March, 2023
1
November, 2018
Available data
571
bigWig
544
bam
363
fastq
278
bed narrowPeak
252
tsv
153
zippedFastqFolder
98
tagAlign
94
bigBed narrowPeak
43
bed broadPeak
43
bigBed broadPeak
29
bed bed3+
9
bed bedMethyl
9
bigBed bedMethyl
3
hdf5
2
csv
2
hic
1
bedpe bed3+
1
tar
Organism
986
Homo sapiens
Biosample type
2058
tissue
986
primary cell
579
cell line
266
in vitro differentiated cells
8
stem cell
Organ
381
epithelium
331
pancreas
connective tissue
33
kidney
32
vasculature
27
blood vessel
19
vein
15
brain
13
liver
12
musculature of body
11
heart
8
blood
8
bodily fluid
4
eye
2
adipose tissue
2
artery
1
bone element
1
bone marrow
1
pericardium
Project
488
AMP
294
HPAP
203
T1D
1
ITG
Genome assembly (visualization)
580
hg19
501
GRCh38
Lab
456
AMP-T2D consortium
294
Klaus Kaestner, Upenn
235
Kyle Gaulton, UCSD
1
ITG
Audit category:
38
inconsistent ontology term
audit script error
Audit category:
44
missing controlled_by
Audit category:
5
inconsistent control read length
2
inconsistent assembly
1
inconsistent control run_type
audit.ERROR.category!
audit script error
organ_slims!
connective tissue
target.investigated_as!
control
BIOSAMPLE
ASSAY
986 results
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ChIP-seq
total RNA-seq
ATAC-seq
single cell RNA-seq
WGBS
snATAC-seq
DNase-seq
pCHi-C
RRBS
Hi-C
DNAme array
FAIRE-seq
small RNA-seq
primary cell
monocyte
85
54
15
1
1
pancreatic alpha cell
7
52
35
12
31
Langerhans cell
85
21
pancreatic beta cell
7
21
23
12
16
exocrine cell
39
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