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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
584
ChIP-seq
297
ATAC-seq
247
total RNA-seq
163
single cell RNA-seq
85
RNA microarray
56
WGBS
55
snATAC-seq
54
pCHi-C
25
Hi-C
19
RRBS
10
MeRIP-seq
5
DNase-seq
5
FAIRE-seq
5
GRO-seq
5
STARR-seq
4
Capture-C
3
CRISPR genome editing followed by DNA sequencing
3
snDrop-seq
2
HiChIP
1
CRISPR RNA-seq
1
CRISPR genome editing followed by sgRNA sequencing
1
CRISPRi RNA-seq
1
DNAme array
1
MPRA
1
shRNA RNA-seq
1
siRNA RNA-seq
1
whole genome sequencing assay
Assay category
163
Transcription
Date released
47
September, 2023
40
September, 2020
34
May, 2022
14
August, 2021
13
February, 2021
9
April, 2020
3
May, 2023
1
December, 2019
1
November, 2018
1
September, 2018
Available data
52
zippedFastqFolder
36
fastq
8
txt
6
tsv
3
csv
Organism
163
Homo sapiens
Biosample type
87
primary cell
76
tissue
Organ
heart
59
kidney
9
lung
6
blood vessel
6
vasculature
2
artery
1
liver
1
musculature of body
Project
85
HPAP
47
KPMP
22
AMP
9
LungMap
Genome assembly (visualization)
GRCh38
100
hg19
Lab
85
Klaus Kaestner, Upenn
47
KPMP
11
AMP-T2D consortium
11
Katalin Susztak, Upenn
9
Xin Sun, UCSD
Audit category:
audit script error
2
inconsistent ontology term
audit.ERROR.category!
audit script error
organ_slims!
heart
assembly!
GRCh38
BIOSAMPLE
ASSAY
163 results
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single cell RNA-seq
primary cell
Langerhans cell
85
pancreatic cell
2
tissue
kidney
59
lung
9
aorta
4
pulmonary artery
2
liver
1
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