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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
36
DNase-seq
17
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
44
DNA accessibility
17
DNA binding
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
32
June, 2019
26
October, 2019
6
February, 2021
5
July, 2019
3
February, 2020
1
May, 2019
Available data
66
bam
44
bed narrowPeak
43
bigWig
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
36
bigBed narrowPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
73
Homo sapiens
Biosample type
73
tissue
Organ
791
pancreas
688
liver
606
connective tissue
459
adipose tissue
426
epithelium
317
kidney
heart
164
vasculature
159
blood vessel
159
bone element
121
artery
99
brain
73
limb
68
blood
68
bodily fluid
62
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
16
skeleton
6
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
73
AMP
Genome assembly (visualization)
49
GRCh38
48
hg19
Lab
73
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
audit.ERROR.category!
audit script error
organ_slims!
heart
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
73 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
2
11
1
5
muscle of arm
17
muscle of leg
13
1
1
tibial artery
2
5
1
1
gastrocnemius medialis
1
4
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