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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
ChIP-seq
4
DNase-seq
pCHi-C
1
RRBS
Assay category
32
DNA accessibility
19
Transcription
4
DNA binding
1
DNA methylation
Target of assay
3
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
control
1
transcription factor
Date released
31
February, 2023
17
October, 2019
6
June, 2019
1
February, 2020
1
July, 2019
Available data
33
bed narrowPeak
6
bam
6
bigBed narrowPeak
6
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
1
bed bedMethyl
1
bigBed bedMethyl
Organism
56
Homo sapiens
Biosample type
52
tissue
4
primary cell
Organ
888
pancreas
680
liver
644
connective tissue
489
epithelium
465
adipose tissue
370
heart
333
kidney
253
brain
212
vasculature
207
blood vessel
158
bone element
132
artery
105
limb
88
musculature of body
63
blood
63
bodily fluid
56
eye
32
nerve
30
embryo
19
lung
19
vein
18
ureter
16
skeleton
16
spleen
4
gonad
4
ovary
2
pericardium
2
pituitary gland
1
lymph node
1
skin of body
1
spinal cord
Project
56
AMP
Genome assembly (visualization)
34
hg19
6
GRCh38
Lab
56
AMP-T2D consortium
audit.ERROR.category!
audit script error
target.investigated_as!
control
assay_title!
pCHi-C
BIOSAMPLE
ASSAY
56 results
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Clear Filters
ATAC-seq
total RNA-seq
ChIP-seq
DNase-seq
RRBS
tissue
retina
15
3
3
islet of Langerhans
1
14
2
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
2
1
1
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